# # A fatal error has been detected by the Java Runtime Environment: # # SIGSEGV (0xb) at pc=0x00002b2b59294ff0, pid=23269, tid=1100228928 # # JRE version: 6.0_24-b07 # Java VM: Java HotSpot(TM) 64-Bit Server VM (19.1-b02 mixed mode linux-amd64 compressed oops) # Problematic frame: # V [libjvm.so+0x779ff0] # # If you would like to submit a bug report, please visit: # http://java.sun.com/webapps/bugreport/crash.jsp # --------------- T H R E A D --------------- Current thread (0x00002aaab4057000): JavaThread "AWT-EventQueue-0" [_thread_in_vm, id=23286, stack(0x0000000041842000,0x0000000041943000)] siginfo:si_signo=SIGSEGV: si_errno=0, si_code=1 (SEGV_MAPERR), si_addr=0x000000000000000a Registers: RAX=0x0000000000000000, RBX=0x00002aaab4057000, RCX=0x00002b2b594b80f0, RDX=0x00002aaaaaceb000 RSP=0x000000004193f498, RBP=0x000000004193f4c0, RSI=0x00002aaab4057000, RDI=0x000000000000000a R8 =0x0000000000000ffc, R9 =0x00002b2b594cc1b0, R10=0x00002b2b594cff78, R11=0x0000000000000000 R12=0x000000000000000a, R13=0x00002aaab40571c8, R14=0x000000000000000a, R15=0x000000004193f650 RIP=0x00002b2b59294ff0, EFL=0x0000000000010206, CSGSFS=0x0000000000000033, ERR=0x0000000000000004 TRAPNO=0x000000000000000e Register to memory mapping: RAX=0x0000000000000000 0x0000000000000000 is pointing to unknown location RBX=0x00002aaab4057000 "AWT-EventQueue-0" prio=10 tid=0x00002aaab4057000 nid=0x5af6 runnable [0x000000004193f000] java.lang.Thread.State: RUNNABLE RCX=0x00002b2b594b80f0 0x00002b2b594b80f0: in /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/server/libjvm.so at 0x00002b2b58b1b000 RDX=0x00002aaaaaceb000 0x00002aaaaaceb000 is pointing to unknown location RSP=0x000000004193f498 0x000000004193f498 is pointing into the stack for thread: 0x00002aaab4057000 "AWT-EventQueue-0" prio=10 tid=0x00002aaab4057000 nid=0x5af6 runnable [0x000000004193f000] java.lang.Thread.State: RUNNABLE RBP=0x000000004193f4c0 0x000000004193f4c0 is pointing into the stack for thread: 0x00002aaab4057000 "AWT-EventQueue-0" prio=10 tid=0x00002aaab4057000 nid=0x5af6 runnable [0x000000004193f000] java.lang.Thread.State: RUNNABLE RSI=0x00002aaab4057000 "AWT-EventQueue-0" prio=10 tid=0x00002aaab4057000 nid=0x5af6 runnable [0x000000004193f000] java.lang.Thread.State: RUNNABLE RDI=0x000000000000000a 0x000000000000000a is pointing to unknown location R8 =0x0000000000000ffc 0x0000000000000ffc is pointing to unknown location R9 =0x00002b2b594cc1b0 0x00002b2b594cc1b0: in /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/server/libjvm.so at 0x00002b2b58b1b000 R10=0x00002b2b594cff78 0x00002b2b594cff78: in /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/server/libjvm.so at 0x00002b2b58b1b000 R11=0x0000000000000000 0x0000000000000000 is pointing to unknown location R12=0x000000000000000a 0x000000000000000a is pointing to unknown location R13=0x00002aaab40571c8 0x00002aaab40571c8 is pointing to unknown location R14=0x000000000000000a 0x000000000000000a is pointing to unknown location R15=0x000000004193f650 0x000000004193f650 is pointing into the stack for thread: 0x00002aaab4057000 "AWT-EventQueue-0" prio=10 tid=0x00002aaab4057000 nid=0x5af6 runnable [0x000000004193f000] java.lang.Thread.State: RUNNABLE Top of Stack: (sp=0x000000004193f498) 0x000000004193f498: 00002b2b58f39b6d 00002aaab4057000 0x000000004193f4a8: 000000004193f4f0 00002aaab40571c8 0x000000004193f4b8: 000000000000000a 000000004193f4e0 0x000000004193f4c8: 00002b2b58f39c44 0000000000000001 0x000000004193f4d8: 00002aaab4057000 000000004193f550 0x000000004193f4e8: 00002b2b58f67ec4 00002aaab4057000 0x000000004193f4f8: 0000000000000000 000000004193f678 0x000000004193f508: 00002aaab2ce0040 00002aaab4057000 0x000000004193f518: 0000000000000150 00002aaab4057000 0x000000004193f528: 00002aaab4238f50 00002aaab4238f50 0x000000004193f538: 0000000000000000 000000000000002a 0x000000004193f548: 00002aaab4238f50 00002aaab40571c8 0x000000004193f558: 00002aaab26019e0 0000000000000000 0x000000004193f568: 0300070000000000 0000000005000000 0x000000004193f578: 00000000db76d968 000000004193f630 0x000000004193f588: 0000000000000000 00000000db76d960 0x000000004193f598: 000000004193f678 00002aaab4057000 0x000000004193f5a8: 00002aaaaaf5a4a9 000000004193f650 0x000000004193f5b8: 000000004193f650 000000004193f600 0x000000004193f5c8: 00002aaab4057000 00002aaaaaf4cdd0 0x000000004193f5d8: 00002aaa00000000 0000000000000001 0x000000004193f5e8: 00000000db789558 000000004193f5e0 0x000000004193f5f8: 00000000db76d960 000000004193f678 0x000000004193f608: 00000000db78d178 0000000000000000 0x000000004193f618: 00000000db76d968 0000000000000000 0x000000004193f628: 000000004193f650 000000004193f6c0 0x000000004193f638: 00002aaaaaf4d96e 00000000db789558 0x000000004193f648: 00002aaaaaf568d6 00000000f56918f8 0x000000004193f658: 0000000000000000 0000000000000000 0x000000004193f668: 0000000000000000 0000000003000700 0x000000004193f678: 0000000005000000 000000004193f680 0x000000004193f688: 00000000db72a4ee 000000004193f798 Instructions: (pc=0x00002b2b59294ff0) 0x00002b2b59294fe0: 89 f0 c9 c3 66 66 66 90 66 66 66 90 66 66 66 90 0x00002b2b59294ff0: 0f b6 07 55 31 c9 48 89 e5 84 c0 74 1b 66 66 90 Stack: [0x0000000041842000,0x0000000041943000], sp=0x000000004193f498, free space=1013k Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code) V [libjvm.so+0x779ff0] V [libjvm.so+0x41ec44] V [libjvm.so+0x44cec4] Java frames: (J=compiled Java code, j=interpreted, Vv=VM code) j ncsa.hdf.hdf5lib.H5.H5DreadVL(IIIII[Ljava/lang/Object;)I+0 j ncsa.hdf.object.h5.H5CompoundDS.read()Ljava/lang/Object;+470 j ncsa.hdf.object.Dataset.getData()Ljava/lang/Object;+9 j ncsa.hdf.view.DefaultTableView.createTable(Lncsa/hdf/object/CompoundDS;)Ljavax/swing/JTable;+75 j ncsa.hdf.view.DefaultTableView.(Lncsa/hdf/view/ViewManager;Ljava/util/HashMap;)V+566 v ~StubRoutines::call_stub j sun.reflect.NativeConstructorAccessorImpl.newInstance0(Ljava/lang/reflect/Constructor;[Ljava/lang/Object;)Ljava/lang/Object;+0 j sun.reflect.NativeConstructorAccessorImpl.newInstance([Ljava/lang/Object;)Ljava/lang/Object;+72 j sun.reflect.DelegatingConstructorAccessorImpl.newInstance([Ljava/lang/Object;)Ljava/lang/Object;+5 j java.lang.reflect.Constructor.newInstance([Ljava/lang/Object;)Ljava/lang/Object;+92 j ncsa.hdf.view.Tools.newInstance(Ljava/lang/Class;[Ljava/lang/Object;)Ljava/lang/Object;+152 j ncsa.hdf.view.DefaultTreeView.showDataContent(Lncsa/hdf/object/HObject;)Lncsa/hdf/view/DataView;+746 j ncsa.hdf.view.DefaultTreeView$HTreeMouseAdapter.mouseReleased(Ljava/awt/event/MouseEvent;)V+299 j java.awt.AWTEventMulticaster.mouseReleased(Ljava/awt/event/MouseEvent;)V+8 j java.awt.Component.processMouseEvent(Ljava/awt/event/MouseEvent;)V+64 j javax.swing.JComponent.processMouseEvent(Ljava/awt/event/MouseEvent;)V+23 j java.awt.Component.processEvent(Ljava/awt/AWTEvent;)V+81 j java.awt.Container.processEvent(Ljava/awt/AWTEvent;)V+18 j java.awt.Component.dispatchEventImpl(Ljava/awt/AWTEvent;)V+566 J java.awt.Container.dispatchEventImpl(Ljava/awt/AWTEvent;)V J java.awt.LightweightDispatcher.retargetMouseEvent(Ljava/awt/Component;ILjava/awt/event/MouseEvent;)V j java.awt.LightweightDispatcher.processMouseEvent(Ljava/awt/event/MouseEvent;)Z+139 J java.awt.Container.dispatchEventImpl(Ljava/awt/AWTEvent;)V j java.awt.Window.dispatchEventImpl(Ljava/awt/AWTEvent;)V+19 j java.awt.Component.dispatchEvent(Ljava/awt/AWTEvent;)V+2 j java.awt.EventQueue.dispatchEventImpl(Ljava/awt/AWTEvent;Ljava/lang/Object;)V+41 j java.awt.EventQueue.access$000(Ljava/awt/EventQueue;Ljava/awt/AWTEvent;Ljava/lang/Object;)V+3 j java.awt.EventQueue$1.run()Ljava/lang/Void;+12 j java.awt.EventQueue$1.run()Ljava/lang/Object;+1 v ~StubRoutines::call_stub J java.security.AccessController.doPrivileged(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;)Ljava/lang/Object; J java.security.AccessControlContext$1.doIntersectionPrivilege(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;Ljava/security/AccessControlContext;)Ljava/lang/Object; j java.security.AccessControlContext$1.doIntersectionPrivilege(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+6 j java.awt.EventQueue$2.run()Ljava/lang/Void;+11 j java.awt.EventQueue$2.run()Ljava/lang/Object;+1 v ~StubRoutines::call_stub J java.security.AccessController.doPrivileged(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;)Ljava/lang/Object; J java.security.AccessControlContext$1.doIntersectionPrivilege(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;Ljava/security/AccessControlContext;)Ljava/lang/Object; j java.awt.EventQueue.dispatchEvent(Ljava/awt/AWTEvent;)V+73 j java.awt.EventDispatchThread.pumpOneEventForFilters(I)Z+204 j java.awt.EventDispatchThread.pumpEventsForFilter(ILjava/awt/Conditional;Ljava/awt/EventFilter;)V+30 j java.awt.EventDispatchThread.pumpEventsForHierarchy(ILjava/awt/Conditional;Ljava/awt/Component;)V+11 j java.awt.EventDispatchThread.pumpEvents(ILjava/awt/Conditional;)V+4 j java.awt.EventDispatchThread.pumpEvents(Ljava/awt/Conditional;)V+3 j java.awt.EventDispatchThread.run()V+9 v ~StubRoutines::call_stub --------------- P R O C E S S --------------- Java Threads: ( => current thread ) 0x0000000046539800 JavaThread "TimerQueue" daemon [_thread_blocked, id=23288, stack(0x00000000424c4000,0x00000000425c5000)] 0x00002aaab4058800 JavaThread "DestroyJavaVM" [_thread_blocked, id=23270, stack(0x0000000040da6000,0x0000000040ea7000)] =>0x00002aaab4057000 JavaThread "AWT-EventQueue-0" [_thread_in_vm, id=23286, stack(0x0000000041842000,0x0000000041943000)] 0x00002aaab4055800 JavaThread "AWT-Shutdown" [_thread_blocked, id=23285, stack(0x0000000041741000,0x0000000041842000)] 0x00002aaab4049000 JavaThread "AWT-XAWT" daemon [_thread_in_native, id=23284, stack(0x00000000411aa000,0x00000000412ab000)] 0x00002aaab4005800 JavaThread "Java2D Disposer" daemon [_thread_blocked, id=23283, stack(0x00000000410a9000,0x00000000411aa000)] 0x0000000046234000 JavaThread "Low Memory Detector" daemon [_thread_blocked, id=23281, stack(0x00000000422c2000,0x00000000423c3000)] 0x0000000046231800 JavaThread "CompilerThread1" daemon [_thread_blocked, id=23280, stack(0x00000000421c1000,0x00000000422c2000)] 0x000000004622c000 JavaThread "CompilerThread0" daemon [_thread_blocked, id=23279, stack(0x0000000040fa8000,0x00000000410a9000)] 0x000000004622a000 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=23278, stack(0x0000000040be8000,0x0000000040ce9000)] 0x0000000046207800 JavaThread "Finalizer" daemon [_thread_blocked, id=23277, stack(0x0000000041531000,0x0000000041632000)] 0x0000000046205800 JavaThread "Reference Handler" daemon [_thread_blocked, id=23276, stack(0x0000000040ea7000,0x0000000040fa8000)] Other Threads: 0x00000000461ff000 VMThread [stack: 0x000000004033a000,0x000000004043b000] [id=23275] 0x000000004623e800 WatcherThread [stack: 0x00000000423c3000,0x00000000424c4000] [id=23282] VM state:not at safepoint (normal execution) VM Mutex/Monitor currently owned by a thread: None Heap PSYoungGen total 37248K, used 1406K [0x00000000f5560000, 0x00000000f7ef0000, 0x0000000100000000) eden space 31936K, 4% used [0x00000000f5560000,0x00000000f56bfb58,0x00000000f7490000) from space 5312K, 0% used [0x00000000f79c0000,0x00000000f79c0000,0x00000000f7ef0000) to space 5312K, 0% used [0x00000000f7490000,0x00000000f7490000,0x00000000f79c0000) PSOldGen total 85248K, used 6672K [0x00000000e0000000, 0x00000000e5340000, 0x00000000f5560000) object space 85248K, 7% used [0x00000000e0000000,0x00000000e0684028,0x00000000e5340000) PSPermGen total 41152K, used 19162K [0x00000000dae00000, 0x00000000dd630000, 0x00000000e0000000) object space 41152K, 46% used [0x00000000dae00000,0x00000000dc0b6a10,0x00000000dd630000) Dynamic libraries: 40000000-40009000 r-xp 00000000 08:01 52363294 /net/frodo/home/roger/jdk1.6.0_24/bin/java 40108000-4010a000 rwxp 00008000 08:01 52363294 /net/frodo/home/roger/jdk1.6.0_24/bin/java 4033a000-4033b000 ---p 4033a000 00:00 0 4033b000-4043b000 rwxp 4033b000 00:00 0 4043b000-4043e000 ---p 4043b000 00:00 0 4043e000-4053c000 rwxp 4043e000 00:00 0 40be8000-40beb000 ---p 40be8000 00:00 0 40beb000-40ce9000 rwxp 40beb000 00:00 0 40da6000-40da9000 ---p 40da6000 00:00 0 40da9000-40ea7000 rwxp 40da9000 00:00 0 40ea7000-40eaa000 ---p 40ea7000 00:00 0 40eaa000-40fa8000 rwxp 40eaa000 00:00 0 40fa8000-40fab000 ---p 40fa8000 00:00 0 40fab000-410a9000 rwxp 40fab000 00:00 0 410a9000-410ac000 ---p 410a9000 00:00 0 410ac000-411aa000 rwxp 410ac000 00:00 0 411aa000-411ad000 ---p 411aa000 00:00 0 411ad000-412ab000 rwxp 411ad000 00:00 0 41531000-41534000 ---p 41531000 00:00 0 41534000-41632000 rwxp 41534000 00:00 0 41741000-41744000 ---p 41741000 00:00 0 41744000-41842000 rwxp 41744000 00:00 0 41842000-41845000 ---p 41842000 00:00 0 41845000-41943000 rwxp 41845000 00:00 0 41943000-41946000 ---p 41943000 00:00 0 41946000-41a44000 rwxp 41946000 00:00 0 41bb0000-41bb3000 ---p 41bb0000 00:00 0 41bb3000-41cb1000 rwxp 41bb3000 00:00 0 41dbd000-41dbe000 ---p 41dbd000 00:00 0 41dbe000-41ebe000 rwxp 41dbe000 00:00 0 41ebe000-41ebf000 ---p 41ebe000 00:00 0 41ebf000-41fbf000 rwxp 41ebf000 00:00 0 41fbf000-41fc0000 ---p 41fbf000 00:00 0 41fc0000-420c0000 rwxp 41fc0000 00:00 0 420c0000-420c1000 ---p 420c0000 00:00 0 420c1000-421c1000 rwxp 420c1000 00:00 0 421c1000-421c4000 ---p 421c1000 00:00 0 421c4000-422c2000 rwxp 421c4000 00:00 0 422c2000-422c5000 ---p 422c2000 00:00 0 422c5000-423c3000 rwxp 422c5000 00:00 0 423c3000-423c4000 ---p 423c3000 00:00 0 423c4000-424c4000 rwxp 423c4000 00:00 0 424c4000-424c7000 ---p 424c4000 00:00 0 424c7000-425c5000 rwxp 424c7000 00:00 0 4619a000-46a20000 rwxp 4619a000 00:00 0 [heap] dae00000-dd630000 rwxp dae00000 00:00 0 dd630000-dd760000 ---p dd630000 00:00 0 dd760000-e0000000 rwxp dd760000 00:00 0 e0000000-e5340000 rwxp e0000000 00:00 0 e5340000-f5560000 rwxp e5340000 00:00 0 f5560000-f7ef0000 rwxp f5560000 00:00 0 f7ef0000-100000000 rwxp f7ef0000 00:00 0 3279400000-327941c000 r-xp 00000000 08:01 11272202 /lib64/ld-2.5.so 327961b000-327961c000 r-xp 0001b000 08:01 11272202 /lib64/ld-2.5.so 327961c000-327961d000 rwxp 0001c000 08:01 11272202 /lib64/ld-2.5.so 3279800000-327994e000 r-xp 00000000 08:01 11272206 /lib64/libc-2.5.so 327994e000-3279b4d000 ---p 0014e000 08:01 11272206 /lib64/libc-2.5.so 3279b4d000-3279b51000 r-xp 0014d000 08:01 11272206 /lib64/libc-2.5.so 3279b51000-3279b52000 rwxp 00151000 08:01 11272206 /lib64/libc-2.5.so 3279b52000-3279b57000 rwxp 3279b52000 00:00 0 3279c00000-3279c82000 r-xp 00000000 08:01 11272219 /lib64/libm-2.5.so 3279c82000-3279e81000 ---p 00082000 08:01 11272219 /lib64/libm-2.5.so 3279e81000-3279e82000 r-xp 00081000 08:01 11272219 /lib64/libm-2.5.so 3279e82000-3279e83000 rwxp 00082000 08:01 11272219 /lib64/libm-2.5.so 327a000000-327a002000 r-xp 00000000 08:01 11272227 /lib64/libdl-2.5.so 327a002000-327a202000 ---p 00002000 08:01 11272227 /lib64/libdl-2.5.so 327a202000-327a203000 r-xp 00002000 08:01 11272227 /lib64/libdl-2.5.so 327a203000-327a204000 rwxp 00003000 08:01 11272227 /lib64/libdl-2.5.so 327a400000-327a416000 r-xp 00000000 08:01 11272411 /lib64/libpthread-2.5.so 327a416000-327a615000 ---p 00016000 08:01 11272411 /lib64/libpthread-2.5.so 327a615000-327a616000 r-xp 00015000 08:01 11272411 /lib64/libpthread-2.5.so 327a616000-327a617000 rwxp 00016000 08:01 11272411 /lib64/libpthread-2.5.so 327a617000-327a61b000 rwxp 327a617000 00:00 0 327a800000-327a814000 r-xp 00000000 08:01 38806971 /usr/lib64/libz.so.1.2.3 327a814000-327aa13000 ---p 00014000 08:01 38806971 /usr/lib64/libz.so.1.2.3 327aa13000-327aa14000 rwxp 00013000 08:01 38806971 /usr/lib64/libz.so.1.2.3 327ac00000-327ac05000 r-xp 00000000 08:01 38822544 /usr/lib64/libXdmcp.so.6.0.0 327ac05000-327ae04000 ---p 00005000 08:01 38822544 /usr/lib64/libXdmcp.so.6.0.0 327ae04000-327ae05000 rwxp 00004000 08:01 38822544 /usr/lib64/libXdmcp.so.6.0.0 327b000000-327b002000 r-xp 00000000 08:01 38822543 /usr/lib64/libXau.so.6.0.0 327b002000-327b201000 ---p 00002000 08:01 38822543 /usr/lib64/libXau.so.6.0.0 327b201000-327b202000 rwxp 00001000 08:01 38822543 /usr/lib64/libXau.so.6.0.0 327b400000-327b505000 r-xp 00000000 08:01 38822545 /usr/lib64/libX11.so.6.2.0 327b505000-327b705000 ---p 00105000 08:01 38822545 /usr/lib64/libX11.so.6.2.0 327b705000-327b70c000 rwxp 00105000 08:01 38822545 /usr/lib64/libX11.so.6.2.0 327b800000-327b810000 r-xp 00000000 08:01 38822563 /usr/lib64/libXext.so.6.4.0 327b810000-327ba10000 ---p 00010000 08:01 38822563 /usr/lib64/libXext.so.6.4.0 327ba10000-327ba11000 rwxp 00010000 08:01 38822563 /usr/lib64/libXext.so.6.4.0 327c800000-327c809000 r-xp 00000000 08:01 38822546 /usr/lib64/libXrender.so.1.3.0 327c809000-327ca08000 ---p 00009000 08:01 38822546 /usr/lib64/libXrender.so.1.3.0 327ca08000-327ca09000 rwxp 00008000 08:01 38822546 /usr/lib64/libXrender.so.1.3.0 327d000000-327d005000 r-xp 00000000 08:01 38803518 /usr/lib64/libXfixes.so.3.1.0 327d005000-327d204000 ---p 00005000 08:01 38803518 /usr/lib64/libXfixes.so.3.1.0 327d204000-327d205000 rwxp 00004000 08:01 38803518 /usr/lib64/libXfixes.so.3.1.0 327d400000-327d409000 r-xp 00000000 08:01 38823235 /usr/lib64/libXcursor.so.1.0.2 327d409000-327d609000 ---p 00009000 08:01 38823235 /usr/lib64/libXcursor.so.1.0.2 327d609000-327d60a000 rwxp 00009000 08:01 38823235 /usr/lib64/libXcursor.so.1.0.2 327e000000-327e007000 r-xp 00000000 08:01 11272414 /lib64/librt-2.5.so 327e007000-327e207000 ---p 00007000 08:01 11272414 /lib64/librt-2.5.so 327e207000-327e208000 r-xp 00007000 08:01 11272414 /lib64/librt-2.5.so 327e208000-327e209000 rwxp 00008000 08:01 11272414 /lib64/librt-2.5.so 327f400000-327f40d000 r-xp 00000000 08:01 11272235 /lib64/libgcc_s-4.1.2-20080825.so.1 327f40d000-327f60d000 ---p 0000d000 08:01 11272235 /lib64/libgcc_s-4.1.2-20080825.so.1 327f60d000-327f60e000 rwxp 0000d000 08:01 11272235 /lib64/libgcc_s-4.1.2-20080825.so.1 327fc00000-327fce6000 r-xp 00000000 08:01 38822550 /usr/lib64/libstdc++.so.6.0.8 327fce6000-327fee5000 ---p 000e6000 08:01 38822550 /usr/lib64/libstdc++.so.6.0.8 327fee5000-327feeb000 r-xp 000e5000 08:01 38822550 /usr/lib64/libstdc++.so.6.0.8 327feeb000-327feee000 rwxp 000eb000 08:01 38822550 /usr/lib64/libstdc++.so.6.0.8 327feee000-327ff00000 rwxp 327feee000 00:00 0 3281000000-3281008000 r-xp 00000000 08:01 38823258 /usr/lib64/libXi.so.6.0.0 3281008000-3281207000 ---p 00008000 08:01 38823258 /usr/lib64/libXi.so.6.0.0 3281207000-3281208000 rwxp 00007000 08:01 38823258 /usr/lib64/libXi.so.6.0.0 3283a00000-3283a15000 r-xp 00000000 08:01 11272422 /lib64/libnsl-2.5.so 3283a15000-3283c14000 ---p 00015000 08:01 11272422 /lib64/libnsl-2.5.so 3283c14000-3283c15000 r-xp 00014000 08:01 11272422 /lib64/libnsl-2.5.so 3283c15000-3283c16000 rwxp 00015000 08:01 11272422 /lib64/libnsl-2.5.so 3283c16000-3283c18000 rwxp 3283c16000 00:00 0 3288600000-3288602000 r-xp 00000000 08:01 11272447 /lib64/libutil-2.5.so 3288602000-3288801000 ---p 00002000 08:01 11272447 /lib64/libutil-2.5.so 3288801000-3288802000 r-xp 00001000 08:01 11272447 /lib64/libutil-2.5.so 3288802000-3288803000 rwxp 00002000 08:01 11272447 /lib64/libutil-2.5.so 328c600000-328c605000 r-xp 00000000 08:01 38823494 /usr/lib64/libXtst.so.6.1.0 328c605000-328c804000 ---p 00005000 08:01 38823494 /usr/lib64/libXtst.so.6.1.0 328c804000-328c805000 rwxp 00004000 08:01 38823494 /usr/lib64/libXtst.so.6.1.0 2aaaaaaac000-2aaaaaab9000 r-xp 00000000 08:01 14558391 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/libverify.so 2aaaaaab9000-2aaaaabb8000 ---p 0000d000 08:01 14558391 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/libverify.so 2aaaaabb8000-2aaaaabbb000 rwxp 0000c000 08:01 14558391 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/var/db/nscd/passwd 2aaaaae2c000-2aaaaae34000 rwxs 00000000 08:01 46041240 /tmp/hsperfdata_roger/23269 2aaaaae34000-2aaaaae42000 r-xp 00000000 08:01 14558396 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/libzip.so 2aaaaae42000-2aaaaaf44000 ---p 0000e000 08:01 14558396 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/libzip.so 2aaaaaf44000-2aaaaaf47000 rwxp 00010000 08:01 14558396 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/libzip.so 2aaaaaf47000-2aaaab1b8000 rwxp 2aaaaaf47000 00:00 0 2aaaab1b8000-2aaaadf48000 rwxp 2aaaab1b8000 00:00 0 2aaaadf48000-2aaaadf52000 rwxp 2aaaadf48000 00:00 0 2aaaadf52000-2aaaae008000 rwxp 2aaaadf52000 00:00 0 2aaaae008000-2aaaae01d000 rwxp 2aaaae008000 00:00 0 2aaaae01d000-2aaaae031000 rwxp 2aaaae01d000 00:00 0 2aaaae031000-2aaaae05b000 rwxp 2aaaae031000 00:00 0 2aaaae05b000-2aaaae0db000 rwxp 2aaaae05b000 00:00 0 2aaaae0db000-2aaaae0f1000 rwxp 2aaaae0db000 00:00 0 2aaaae0f1000-2aaaae131000 rwxp 2aaaae0f1000 00:00 0 2aaaae131000-2aaaae15c000 rwxp 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00000000 08:01 46432270 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/xawt/libmawt.so 2aaab20e8000-2aaab21e7000 ---p 00042000 08:01 46432270 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/xawt/libmawt.so 2aaab21e7000-2aaab21f3000 rwxp 00041000 08:01 46432270 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/xawt/libmawt.so 2aaab21f3000-2aaab21f4000 rwxp 2aaab21f3000 00:00 0 2aaab21f4000-2aaab226d000 r-xp 00000000 08:01 14558394 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/libfontmanager.so 2aaab226d000-2aaab236c000 ---p 00079000 08:01 14558394 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/libfontmanager.so 2aaab236c000-2aaab2381000 rwxp 00078000 08:01 14558394 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/libfontmanager.so 2aaab2381000-2aaab2392000 rwxp 2aaab2381000 00:00 0 2aaab2392000-2aaab23a5000 r-xp 00000000 08:01 52396034 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/libnet.so 2aaab23a5000-2aaab24a6000 ---p 00013000 08:01 52396034 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/home/roger/Software/hdf5-1.8.6/dist/lib/libhdf5.so.6.0.5 2aaab2ad5000-2aaab2cd4000 ---p 002a8000 08:01 34275490 /home/roger/Software/hdf5-1.8.6/dist/lib/libhdf5.so.6.0.5 2aaab2cd4000-2aaab2cdf000 rwxp 002a7000 08:01 34275490 /home/roger/Software/hdf5-1.8.6/dist/lib/libhdf5.so.6.0.5 2aaab2cdf000-2aaab2ce1000 rwxp 2aaab2cdf000 00:00 0 2aaab2ce1000-2aaab2cfb000 r-xp 00000000 08:01 34275761 /home/roger/Software/hdf5-1.8.6/dist/lib/libhdf5_hl.so.6.0.5 2aaab2cfb000-2aaab2efb000 ---p 0001a000 08:01 34275761 /home/roger/Software/hdf5-1.8.6/dist/lib/libhdf5_hl.so.6.0.5 2aaab2efb000-2aaab2efc000 rwxp 0001a000 08:01 34275761 /home/roger/Software/hdf5-1.8.6/dist/lib/libhdf5_hl.so.6.0.5 2aaab2efc000-2aaab2f0d000 rwxp 2aaab2efc000 00:00 0 2aaab2f0d000-2aaab2f24000 r-xp 00000000 08:01 10879870 /home/roger/Software/openmpi-1.5.2/dist/lib/libmpi_cxx.so.1.0.1 2aaab2f24000-2aaab3124000 ---p 00017000 08:01 10879870 /home/roger/Software/openmpi-1.5.2/dist/lib/libmpi_cxx.so.1.0.1 2aaab3124000-2aaab3126000 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14558473 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/resources.jar 2aaab36eb000-2aaab36ed000 r-xs 00018000 08:01 44598582 /home/roger/Software/HDFView/dist/lib/fits.jar 2aaab36ed000-2aaab36f3000 r-xs 0002b000 08:01 44598583 /home/roger/Software/HDFView/dist/lib/junit.jar 2aaab36f3000-2aaab36fa000 r-xs 00080000 08:01 44598584 /home/roger/Software/HDFView/dist/lib/netcdf.jar 2aaab36fa000-2aaab3b3a000 rwxs 00000000 00:09 25493521 /SYSV00000000 (deleted) 2aaab4000000-2aaab5a28000 rwxp 2aaab4000000 00:00 0 2aaab5a28000-2aaab8000000 ---p 2aaab5a28000 00:00 0 2b2b58a0c000-2b2b58a0e000 rwxp 2b2b58a0c000 00:00 0 2b2b58a0e000-2b2b58a15000 r-xp 00000000 08:01 46399664 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/jli/libjli.so 2b2b58a15000-2b2b58b16000 ---p 00007000 08:01 46399664 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/jli/libjli.so 2b2b58b16000-2b2b58b18000 rwxp 00008000 08:01 46399664 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/jli/libjli.so 2b2b58b18000-2b2b58b1b000 rwxp 2b2b58b18000 00:00 0 2b2b58b1b000-2b2b59359000 r-xp 00000000 08:01 14558411 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/server/libjvm.so 2b2b59359000-2b2b59458000 ---p 0083e000 08:01 14558411 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/server/libjvm.so 2b2b59458000-2b2b595ec000 rwxp 0083d000 08:01 14558411 /net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/server/libjvm.so 2b2b595ec000-2b2b59625000 rwxp 2b2b595ec000 00:00 0 7fff04aad000-7fff04ac3000 rwxp 7ffffffe8000 00:00 0 [stack] ffffffffff600000-ffffffffffe00000 ---p 00000000 00:00 0 [vdso] VM Arguments: jvm_args: -Xmx512m java_command: ncsa.hdf.view.HDFView -root . Launcher Type: SUN_STANDARD Environment Variables: JAVA_HOME=/home/roger/jdk1.6.0_21 CLASSPATH=./dist/HDFView.jar:/share/apps/intel/itac/8.0.0.011/itac/lib_impi4 PATH=/net/frodo/home/roger/jdk1.6.0_24/bin:/net/frodo/home/roger/testing-grounds/current/bin:/home/roger/jdk1.6.0_21/bin:/share/network/linux-x86_64/bin:/share/network/noarch/bin:/share/apps/intel//ictce/4.0.0.020/bin:/share/apps/intel/itac/8.0.0.011/bin:/share/apps/intel//impi/4.0.0.028/intel64/bin:/share/apps/intel/Compiler/11.1/072/bin/intel64:/share/apps/intel/Compiler/11.1/072/bin/intel64:/usr/lib64/qt-3.3/bin:/usr/kerberos/bin:/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/opt/maui/bin:/opt/torque/bin:/opt/torque/sbin:/share/apps/MOE/2010_10/bin:/home/roger/bin USERNAME=roger LD_LIBRARY_PATH=/net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64/server:/net/frodo/home/roger/jdk1.6.0_24/jre/lib/amd64:/net/frodo/home/roger/jdk1.6.0_24/jre/../lib/amd64:/home/roger/Software/openmpi-1.5.2/dist/lib:/lib/openmpi:/home/roger/Software/hdf5-1.8.6/dist/lib:./../HDF5View/dist/Release/GNU-Linux-x86:/lib64:/usr/lib64:./lib:/share/network/linux-x86_64/lib:/share/apps/intel/itac/8.0.0.011/itac/slib_impi4:/share/apps/intel/mkl/10.2.5.035/lib/em64t:/share/apps/intel//impi/4.0.0.028/intel64/lib:/share/apps/intel/Compiler/11.1/072/lib/intel64:/share/apps/intel/Compiler/11.1/072/lib/intel64 SHELL=/bin/bash DISPLAY=:0.0 Signal Handlers: SIGSEGV: [libjvm.so+0x791b30], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGBUS: [libjvm.so+0x791b30], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGFPE: [libjvm.so+0x640ba0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGPIPE: [libjvm.so+0x640ba0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGXFSZ: [libjvm.so+0x640ba0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGILL: [libjvm.so+0x640ba0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGUSR1: SIG_DFL, sa_mask[0]=0x00000000, sa_flags=0x00000000 SIGUSR2: [libjvm.so+0x643780], sa_mask[0]=0x00000000, sa_flags=0x10000004 SIGHUP: [libjvm.so+0x643380], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGINT: [libjvm.so+0x643380], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGTERM: [libjvm.so+0x643380], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGQUIT: [libjvm.so+0x643380], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 --------------- S Y S T E M --------------- OS:CentOS release 5.5 (Final) uname:Linux 2.6.18-194.26.1.el5 #1 SMP Tue Nov 9 12:54:20 EST 2010 x86_64 libc:glibc 2.5 NPTL 2.5 rlimit: STACK 10240k, CORE 0k, NPROC 71680, NOFILE 4096, AS infinity load average:0.54 0.41 0.36 /proc/meminfo: MemTotal: 8178500 kB MemFree: 218444 kB Buffers: 232584 kB Cached: 653392 kB SwapCached: 0 kB Active: 5505084 kB Inactive: 662440 kB HighTotal: 0 kB HighFree: 0 kB LowTotal: 8178500 kB LowFree: 218444 kB SwapTotal: 0 kB SwapFree: 0 kB Dirty: 76 kB Writeback: 0 kB AnonPages: 5281496 kB Mapped: 91552 kB Slab: 1713676 kB PageTables: 36672 kB NFS_Unstable: 0 kB Bounce: 0 kB CommitLimit: 4089248 kB Committed_AS: 6677192 kB VmallocTotal: 34359738367 kB VmallocUsed: 296264 kB VmallocChunk: 34359441403 kB HugePages_Total: 0 HugePages_Free: 0 HugePages_Rsvd: 0 Hugepagesize: 2048 kB CPU:total 4 (4 cores per cpu, 1 threads per core) family 6 model 23 stepping 6, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1 Memory: 4k page, physical 8178500k(218444k free), swap 0k(0k free) vm_info: Java HotSpot(TM) 64-Bit Server VM (19.1-b02) for linux-amd64 JRE (1.6.0_24-b07), built on Feb 2 2011 16:55:54 by "java_re" with gcc 3.2.2 (SuSE Linux) time: Wed Apr 6 12:02:23 2011 elapsed time: 71081 seconds